Lutz.cpp

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/*
 * Lutz.cpp
 *
 *  Created on: Jan 17, 2017
 *      Author: mschefer
 */
 
 
#include "SEFramework/Image/Image.h"
#include "SEFramework/Image/VectorImage.h"
#include "SEFramework/Image/TileManager.h"
#include "SEFramework/Source/SourceWithOnDemandProperties.h"
 
#include "SEImplementation/Measurement/MultithreadedMeasurement.h"
#include "SEImplementation/Property/PixelCoordinateList.h"
#include "SEImplementation/Segmentation/Lutz.h"
 
#include "SEImplementation/Segmentation/LutzSegmentation.h"
 
namespace SourceXtractor {
 
// class Lutz
//
// Note: this implementation uses an 8-way connection (including corners)
 
 
enum class LutzStatus {
  COMPLETE = 0,
  INCOMPLETE,
  NONOBJECT,
  OBJECT
};
 
enum class LutzMarker {
  ZERO = 0,
  S,
  S0,
  F,
  F0
};
 
 
void Lutz::labelImage(LutzListener& listener, const DetectionImage& image, PixelCoordinate offset) {
  int width = image.getWidth() + 1; // one extra pixel
 
  std::vector<LutzMarker> marker(image.getWidth()+1);
  std::fill(marker.begin(), marker.end(), LutzMarker::ZERO);
 
  std::vector<PixelGroup> group_stack;
  std::vector<LutzStatus> ps_stack;
 
  std::unordered_map<int, PixelGroup> inc_group_map;
  //std::shared_ptr<VectorImage<unsigned int>> check_image=VectorImage<unsigned int>::create(image.getWidth(), image.getHeight());
 
  int lines = image.getHeight();
  int chunk_height = TileManager::getInstance()->getTileHeight();
  std::shared_ptr<ImageChunk<DetectionImage::PixelType>> chunk;
 
  for (int y = 0; y < lines; y++) {
    LutzStatus ps = LutzStatus::COMPLETE;
    LutzStatus cs = LutzStatus::NONOBJECT;
 
    if (y % chunk_height == 0) {
      chunk = image.getChunk(0, y, image.getWidth(), std::min(chunk_height, lines - y));
    }
 
    int dy = y % chunk_height;
    for (int x=0; x < width; x++) {
      DetectionImage::PixelType value = (x == width - 1) ? 0.0 : chunk->getValue(x, dy);
 
      LutzMarker last_marker = marker[x];
      marker[x] = LutzMarker::ZERO;
 
      bool in_object = value > 0.0;
      if (in_object) {
        // We have an object pixel
        //check_image->setValue(x, y, 1);
        if (cs != LutzStatus::OBJECT) {
          // Previous pixel not object, start new segment
 
          cs = LutzStatus::OBJECT;
 
          if (ps == LutzStatus::OBJECT) {
            // Pixel touches segment on preceding scan
 
            if (group_stack.back().start == -1) {
              // First pixel of object on current scan
              marker[x] = LutzMarker::S;
              group_stack.back().start = x;
            } else {
              marker[x] = LutzMarker::S0;
            }
          } else {
            // Start of completely new pixel group
            ps_stack.push_back(ps);
            ps = LutzStatus::COMPLETE;
            group_stack.emplace_back();
            marker[x] = LutzMarker::S;
            group_stack.back().start = x;
          }
        }
      }
 
      if (last_marker != LutzMarker::ZERO) {
        // There is a marker from the previous scan to process
        // This is done for both object and non-object pixels
 
        if (last_marker == LutzMarker::S) {
          // Start of pixel group on preceding scan
          ps_stack.push_back(ps);
          if (cs == LutzStatus::NONOBJECT) {
            // The S marker is the first encounter with this group
            ps_stack.push_back(LutzStatus::COMPLETE);
 
            group_stack.emplace_back(std::move(inc_group_map.at(x)));
            inc_group_map.erase(x);
 
            group_stack.back().start = -1;
          } else {
            // Add group to current group
            auto prev_group = inc_group_map.at(x);
            inc_group_map.erase(x);
 
            group_stack.back().merge_pixel_list(prev_group);
          }
          ps = LutzStatus::OBJECT;
        }
 
        if (last_marker == LutzMarker::S0) {
          // Start of secondary segment of group on preceding scan
 
          if (cs == LutzStatus::OBJECT && ps == LutzStatus::COMPLETE) {
            // Current group is joined to preceding group
            ps_stack.pop_back();
            auto old_group = std::move(group_stack.back());
            group_stack.pop_back();
            group_stack.back().merge_pixel_list(old_group);
 
            if (group_stack.back().start == -1) {
              group_stack.back().start = old_group.start;
            } else {
              marker[old_group.start] = LutzMarker::S0;
            }
          }
          ps = LutzStatus::OBJECT;
        }
 
        if (last_marker == LutzMarker::F0) {
          ps = LutzStatus::INCOMPLETE;
        }
 
        if (last_marker == LutzMarker::F) {
 
 
          ps = ps_stack.back();
          ps_stack.pop_back();
 
          if (cs == LutzStatus::NONOBJECT && ps == LutzStatus::COMPLETE) {
            // If no more of current group to come then finish it
            auto old_group = std::move(group_stack.back());
            group_stack.pop_back();
            if (old_group.start == -1) {
              // Pixel group completed
              listener.publishGroup(old_group);
            } else {
              marker[old_group.end] = LutzMarker::F;
              inc_group_map[old_group.start] = old_group;
            }
            ps = ps_stack.back();
            ps_stack.pop_back();
          }
        }
      }
 
      if (in_object) {
        // Update current group by current pixel
        group_stack.back().pixel_list.push_back(PixelCoordinate(x, y) + offset);
 
      } else {
        // The current pixel is not object
 
        if (cs == LutzStatus::OBJECT) {
          // Previous pixel was object. Finish segment
          cs = LutzStatus::NONOBJECT;
 
          if (ps != LutzStatus::COMPLETE) {
            // End of segment but not necessarily of section
            marker[x] = LutzMarker::F0;
            group_stack.back().end = x;
          } else {
            // End of final segment of group section
            ps = ps_stack.back();
            ps_stack.pop_back();
 
            marker[x] = LutzMarker::F;
 
            auto old_group = group_stack.back();
            group_stack.pop_back();
 
            inc_group_map[old_group.start] = old_group;
          }
        }
      }
    }
    listener.notifyProgress(y + 1, lines);
  }
 
  //FitsWriter::writeFile<unsigned int>(*check_image, "segCheck.fits");
  // Process the pixel groups left in the inc_group_map
  for (auto& group : inc_group_map) {
    listener.publishGroup(group.second);
  }
}
 
void LutzList::publishGroup(PixelGroup& pixel_group) {
  m_groups.push_back(pixel_group);
}
 
 
}